nuget
The dynamic programming algorithm namespace root: shared sequence alignment abstractions.
Microsoft.VisualBasic.DataMining.DynamicProgramming 1.0.9762.11310.
01 Namespaces
Microsoft.VisualBasic.DataMining.DynamicProgramming
| Type | Summary | Members |
|---|---|---|
| CenterStar | Multiple-sequence-alignment This program calculates the multiple sequence alignment of k>1 DNA sequences. | 22 |
| Extensions | 3 | |
| KBandSearch | Global alignment (Needleman-Wunsch) with a k-band heuristic. | 7 |
Microsoft.VisualBasic.DataMining.DynamicProgramming.CenterStar
| Type | Summary | Members |
|---|---|---|
| CenterGaps | 某一条序列与中心序列两两比对之后，在中心坐标上诱导出的空格列表。 | 4 |
Microsoft.VisualBasic.DataMining.DynamicProgramming.NeedlemanWunsch
The Needleman-Wunsch global sequence alignment algorithm.
| Type | Summary | Members |
|---|---|---|
| NeedlemanWunsch | Needleman-Wunsch Algorithm Bioinformatics 1, WS 15/16 Dr. | 3 |
| ScoreMatrix | 4 | |
| Workspace | Base class for the Needleman-Wunsch Algorithm Bioinformatics 1, WS 15/16 Dr. | 10 |
Microsoft.VisualBasic.DataMining.DynamicProgramming.SmithWaterman
The Smith-Waterman local sequence alignment algorithm.
| Type | Summary | Members |
|---|---|---|
| Directions | Constants of directions. | 8 |
| GSW | Generic Smith-Waterman computing kernel.(Smith-Waterman泛型化通用计算核心) | 25 |
| LocalHSPMatch | 9 | |
| Match | the smith-waterman HSP match class defintion | 11 |
| SimpleChaining | 6 |