PPRSolver

Full name SMRUCC.genomics.Analysis.CellPhenotype.PPRSolver Assembly SMRUCC.genomics.Analysis.CellPhenotype Members 3

Personalized PageRank（PPR）+ 代谢扩散稳态计算

01 Syntax

SMRUCC.genomics.Analysis.CellPhenotype.PPRSolver

02 Methods

Name	Overloads	Summary
ComputeSteadyStateClosed	1	计算封闭代谢网络的全局稳态浓度分布（质量守恒）
ComputePPR	1	计算 Personalized PageRank 稳态分布
SolveWithDrain	1	带 Drain 项的稳态解（简单 Jacobi 迭代）

03 Members

method ComputeSteadyStateClosed #

ComputeSteadyStateClosed(MetabolicNetwork, Double, Double, Int32, Boolean)

计算封闭代谢网络的全局稳态浓度分布（质量守恒）

Remarks

认为物质在 network 中永不消耗，只是不断循环反应，直到完全混合。封闭系统充分混合后的稳态只取决于网络结构。

method ComputePPR #

ComputePPR(MetabolicNetwork, Int32, Double, Double)

计算 Personalized PageRank 稳态分布

Remarks

用途：同位素示踪 / 碳流 / 模拟营养注入点

Parameters

method SolveWithDrain #

SolveWithDrain(MetabolicNetwork, Int32, Double(), Double, Int32)

带 Drain 项的稳态解（简单 Jacobi 迭代）