nuget
Main enrichment wrapper. Provides a convenient interface to run one or more FELLA enrichment methods on a set of input compounds.
Usage: Dim result = Enrich.Run(compounds, data, methods, approx)
Enrich
01 Syntax
SMRUCC.genomics.Analysis.HTS.FELLA.Core.Enrich
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| Run | 1 | Run enrichment analysis with specified methods and approximation. |
| ListMethods | 1 | List all available enrichment methods. |
03 Members
Run enrichment analysis with specified methods and approximation.
Parameters
| Name | Type | Description |
|---|---|---|
compounds | IEnumerable(Of String) | Input compound KEGG IDs |
data | FellaData | Precomputed FELLA database |
methods | List(Of EnrichmentMethod) | Methods to run (default: all three) |
approx | ApproximationMethod | Approximation method for p-values |
nSim | Int32 | Number of Monte Carlo iterations |
Returns
FellaUser object with all results populated
ListMethods
List all available enrichment methods.