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Create background model for KEGG pathway enrichment based on the kegg metabolites, used for LC-MS metabolism data analysis.
KEGGCompounds
01 Syntax
SMRUCC.genomics.Analysis.HTS.GSEA.KnowledgeBase.KEGGCompounds
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| CreateGeneralBackground | 1 | Create general reference GSEA background model from LC-MS metabolism analysis result. |
| CreateBackground | 1 | Create GSEA background model from LC-MS metabolism analysis result. |
03 Members
CreateGeneralBackground``1(
IEnumerable(Of ``0), Index(Of String), String)Create general reference GSEA background model from LC-MS metabolism analysis result.
Parameters
| Name | Type | Description |
|---|---|---|
maps | IEnumerable(Of ``0) | - |
KO | Index(Of String) | a indexer for do map selection, which means only the KEGG maps that contains the symbols of these KO id then will be selected for create the background cluster model. |
CreateBackground(
OrganismInfo, IEnumerable(Of Pathway))Create GSEA background model from LC-MS metabolism analysis result.
Parameters
| Name | Type | Description |
|---|---|---|
maps | OrganismInfo | - |