nuget
Where a 3-mer means 3 consecutive DNA bases ranging from AAA to TTT. Each element of the 1 x 64 vector yi=(yi1, yi2, ... , yij, ... yi64) represents the count Of its corresponding 3-mer in the given sequence xi.
I3Mers
01 Syntax
SMRUCC.genomics.Analysis.Metagenome.BEBaC.I3Mers
02 Fields
| Name | Overloads | Summary |
|---|---|---|
| AAA | 1 | |
| AAG | 1 | |
| AAC | 1 | |
| AAT | 1 | |
| ACA | 1 | |
| ACG | 1 | |
| ACC | 1 | |
| ACT | 1 | |
| AGA | 1 | |
| AGG | 1 | |
| AGC | 1 | |
| AGT | 1 | |
| ATA | 1 | |
| ATT | 1 | |
| ATG | 1 | |
| ATC | 1 | |
| GAA | 1 | |
| GAG | 1 | |
| GAT | 1 | |
| GAC | 1 | |
| GGA | 1 | |
| GGG | 1 | |
| GGT | 1 | |
| GGC | 1 | |
| GTA | 1 | |
| GTT | 1 | |
| GTG | 1 | |
| GTC | 1 | |
| GCA | 1 | |
| GCG | 1 | |
| GCT | 1 | |
| GCC | 1 | |
| CAA | 1 | |
| CAG | 1 | |
| CAT | 1 | |
| CAC | 1 | |
| CGA | 1 | |
| CGG | 1 | |
| CGT | 1 | |
| CGC | 1 | |
| CCA | 1 | |
| CCG | 1 | |
| CCT | 1 | |
| CCC | 1 | |
| CTA | 1 | |
| CTG | 1 | |
| CTC | 1 | |
| CTT | 1 | |
| TAA | 1 | |
| TAG | 1 | |
| TAC | 1 | |
| TAT | 1 | |
| TGA | 1 | |
| TGG | 1 | |
| TGC | 1 | |
| TGT | 1 | |
| TCA | 1 | |
| TCG | 1 | |
| TCT | 1 | |
| TCC | 1 | |
| TTA | 1 | |
| TTG | 1 | |
| TTC | 1 | |
| TTT | 1 |
03 Members
AAA
AAG
AAC
AAT
ACA
ACG
ACC
ACT
AGA
AGG
AGC
AGT
ATA
ATT
ATG
ATC
GAA
GAG
GAT
GAC
GGA
GGG
GGT
GGC
GTA
GTT
GTG
GTC
GCA
GCG
GCT
GCC
CAA
CAG
CAT
CAC
CGA
CGG
CGT
CGC
CCA
CCG
CCT
CCC
CTA
CTG
CTC
CTT
TAA
TAG
TAC
TAT
TGA
TGG
TGC
TGT
TCA
TCG
TCT
TCC
TTA
TTG
TTC
TTT