Rscript

Full name SMRUCC.genomics.Analysis.RNA_Seq.RTools.WGCNA.Rscript Assembly SMRUCC.genomics.Analysis.RNA_Seq.RTools.WGCNA Members 4

01 Syntax

SMRUCC.genomics.Analysis.RNA_Seq.RTools.WGCNA.Rscript

02 Methods

Name	Overloads	Summary
FastImports	2	load wgcna weight matrix
LoadTOMModuleGraph	2

03 Members

method FastImports #

FastImports(IEnumerable(Of String), Double, String)

load wgcna weight matrix

Remarks

imports a network edge table file that export from WGCNA TOM module, with data headers:

fromNode

toNode

weight

direction

fromAltName

toAltName

Parameters

Name	Type	Description
`files`	`IEnumerable(Of String)`	weight edge data in different modules result folder
`threshold`	`Double`	-
`prefix`	`String`	-

method FastImports overload 2 #

FastImports(String, Double, String)

load wgcna weight matrix

Remarks

imports a network edge table file that export from WGCNA TOM module, with data headers:

fromNode

toNode

weight

direction

fromAltName

toAltName

Parameters

method LoadTOMModuleGraph overload 2 #

LoadTOMModuleGraph(String, String, Double, String, Index(Of String))

load network graph from the WGCNA exportNetworkToCytoscape function exports

Parameters

method LoadTOMModuleGraph #

LoadTOMModuleGraph(IEnumerable(Of Weight), IEnumerable(Of CExprMods), Index(Of String))

Parameters

Name	Type	Description
`edges`	`IEnumerable(Of Weight)`	-
`nodes`	`IEnumerable(Of CExprMods)`	-
`subset`	`Index(Of String)`	make subset of the input raw network via a given node id vector