ReferenceRule

Full name SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998.ReferenceRule Assembly SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative Members 5

生成参考所使用的外标尺核酸片段

01 Syntax

SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998.ReferenceRule

02 Methods

Name	Overloads	Summary
dnaA_gyrB	2	Using the DNA segment between the dnaA and gyrB as the reference rule.
GetReferenceRule	1	Gets the segment betweens the dnaA and gyrB nucleotide sequence as the default reference rule for the homogeneity measuring.

03 Properties

Name	Overloads	Summary
dnaA	1	chromosomal replication initiator protein DnaA
gyrB	1	DNA gyrase, B subunit

04 Members

method dnaA_gyrB overload 2 #

dnaA_gyrB(FastaSeq, PTT)

Using the DNA segment between the dnaA and gyrB as the reference rule.

Parameters

Name	Type	Description
`nt`	`FastaSeq`	-
`proteins`	`PTT`	-

method dnaA_gyrB #

dnaA_gyrB(File)

Using the DNA segment between the dnaA and gyrB as the reference rule.

method GetReferenceRule #

GetReferenceRule(FastaSeq, PTT, NamedCollection(Of String), NamedCollection(Of String))

Gets the segment betweens the dnaA and gyrB nucleotide sequence as the default reference rule for the homogeneity measuring.

(获取默认的外标尺：基因组之中的dnaA-gyrB之间的序列)

property dnaA #

dnaA

chromosomal replication initiator protein DnaA

property gyrB #

gyrB

DNA gyrase, B subunit