nuget
Build probability matrix from clustal multiple sequence alignment.
PWM
01 Syntax
SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Motif.PWM
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| FromMla | 1 | Build probability matrix from clustal multiple sequence alignment, this matrix model can be used for the downstream sequence logo drawing visualization. |
| makeResidue | 1 | Construct of the residue model in the PWM |
03 Members
FromMla(
FastaFile)Build probability matrix from clustal multiple sequence alignment, this matrix model can be used for the downstream sequence logo drawing visualization.
Remarks
(从Clustal比对结果之中生成PWM用于SequenceLogo的绘制)
Parameters
| Name | Type | Description |
|---|---|---|
fa | FastaFile | A fasta sequence file from the clustal multiple sequence alignment. |
makeResidue(
Dictionary(Of Char, Double), Double, Double, Int32, Int32)Construct of the residue model in the PWM
Parameters
| Name | Type | Description |
|---|---|---|
f | Dictionary(Of Char, Double) | ATGC |
h | Double | - |
en | Double | - |
n | Int32 | - |