nuget
The kegg pathway annotation data.
Pathway
00 Remarks
(这个代谢途径模型是针对某一个物种而言的)
01 Syntax
SMRUCC.genomics.Assembly.KEGG.DBGET.bGetObject.Pathway
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| IsContainsModule | 1 | Is current pathway object contains the specific module information?(当前的代谢途径对象是否包含有目标模块信息.) |
| GetCompoundCollection | 1 | Imports KEGG compounds from pathways model. |
| GetPathwayGenes | 1 | 获取这个代谢途径之中的所有的基因。这个是安全的函数，当出现空值的基因集合的时候函数会返回一个空集合而非空值 |
| IsContainsCompound | 1 | |
| IsContainsGeneObject | 1 | |
| GetCompoundSet | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| modules | 1 | The module entry collection data in this pathway. |
| compound | 1 | The kegg compound entry collection data in this pathway. |
| references | 1 | Reference list of this biological pathway |
| class | 1 | |
| drugs | 1 | |
| otherDBs | 1 | |
| pathwayMap | 1 | |
| related_pathways | 1 | |
| genes | 1 | |
| briteID | 1 | |
| disease | 1 | |
| organism | 1 | |
| KOpathway | 1 |
04 Fields
| Name | Overloads | Summary |
|---|---|---|
| xmlns | 1 |
05 Members
IsContainsModule(
String)Is current pathway object contains the specific module information?(当前的代谢途径对象是否包含有目标模块信息.)
Parameters
| Name | Type | Description |
|---|---|---|
ModuleId | String | - |
GetCompoundCollection(
String)Imports KEGG compounds from pathways model.
Parameters
| Name | Type | Description |
|---|---|---|
ImportsDIR | String | - |
GetPathwayGenes
获取这个代谢途径之中的所有的基因。这个是安全的函数，当出现空值的基因集合的时候函数会返回一个空集合而非空值
modules
The module entry collection data in this pathway.
compound
The kegg compound entry collection data in this pathway. (可以通过这个代谢物的列表得到可以出现在当前的这个代谢途径之中的所有的非酶促反应过程， 将整个基因组里面的化合物合并起来则可以得到整个细胞内可能存在的非酶促反应过程)
references
Reference list of this biological pathway
xmlns
class
drugs
otherDBs
pathwayMap
genes
briteID
disease
organism
KOpathway
IsContainsCompound(
String)IsContainsGeneObject(
String)GetCompoundSet()