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API Docs / SMRUCC.genomics.Core / URLEncoder

URLEncoder

Full name SMRUCC.genomics.Assembly.KEGG.WebServices.URLEncoder Assembly SMRUCC.genomics.Core Members 6

The kegg pathway map url encoder

pattern:

 http://www.genome.jp/kegg-bin/show_pathway?{pathway_ID}/{geneID}%09{color}/{geneID}%09{color}/{geneID}%09{color}

00 Remarks

Generates the enrichment term result for kegg url example like: http://www.genome.jp/kegg-bin/show_pathway?hsa03013/hsa:8563%09red/hsa:3837%09red/hsa:1983%09red/hsa:4686%09red/hsa:1974%09red/hsa:23165%09red/hsa:9688%09red/hsa:57510%09red/hsa:7514%09red/hsa:60528%09red/hsa:1981%09red/hsa:51068%09red/hsa:5905%09red/hsa:1917%09red/hsa:57187%09red/hsa:1977%09red/hsa:8894%09red/hsa:79023%09red/hsa:8891%09red/hsa:8890%09red/hsa:8893%09red/hsa:8892%09red/hsa:11260%09red/hsa:79902%09red/hsa:8669%09red/hsa:26986%09red/hsa:9984%09red/hsa:23191%09red/hsa:26019%09red/hsa:79228%09red/hsa:1965%09red/hsa:9669%09red

01 Syntax

SMRUCC.genomics.Assembly.KEGG.WebServices.URLEncoder

02 Methods

NameOverloadsSummary
URLParser 1
URLParser3 1
URLParser2 1
URLParser1 1 {id -> color}
KEGGURLEncode 1 用于可视化差异表达基因或者富集结果
VisualizePathwayMap 1 可视化差异表达基因的代谢途径或者功能富集分析结果的代谢途径

03 Members

method URLParser #
URLParser(String)
Parameters
NameTypeDescription
urlStrString
method URLParser3 #
URLParser3(String)
Parameters
NameTypeDescription
urlString

mmu04140+C00035+C00044

method URLParser2 #
URLParser2(String)
Parameters
NameTypeDescription
urlString

http://www.kegg.jp/pathway/map01230/C00037/red/C00049/blue

method URLParser1 #
URLParser1(String)

{id -> color}

Parameters
NameTypeDescription
urlString

http://www.genome.jp/kegg-bin/show_pathway?{pathway_ID}/{geneID}%09{color}/{geneID}%09{color}/{geneID}%09{color}

method KEGGURLEncode #
KEGGURLEncode(NamedCollection(Of NamedValue(Of String)))

用于可视化差异表达基因或者富集结果

Parameters
NameTypeDescription
profilesNamedCollection(Of NamedValue(Of String))

-

method VisualizePathwayMap #
VisualizePathwayMap(NamedCollection(Of NamedValue(Of String)), String)

可视化差异表达基因的代谢途径或者功能富集分析结果的代谢途径

Parameters
NameTypeDescription
profilesNamedCollection(Of NamedValue(Of String))

-

save$String

-