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API Docs / SMRUCC.genomics.Core / GBFFFeatureDumps

GBFFFeatureDumps

Full name SMRUCC.genomics.Assembly.NCBI.GenBank.GBFFFeatureDumps Assembly SMRUCC.genomics.Core Members 4

01 Syntax

SMRUCC.genomics.Assembly.NCBI.GenBank.GBFFFeatureDumps

02 Methods

NameOverloadsSummary
FeatureDumps 1 Dump feature sites information data into a tabular dataframe.
GetmRNASequence 1 get mRNA sequence
GbffToPTT 1

03 Fields

NameOverloadsSummary
_dumpMethods 1 Method delegates for feature dumping

04 Members

method FeatureDumps #
FeatureDumps(File, String(), Boolean)

Dump feature sites information data into a tabular dataframe.

Parameters
NameTypeDescription
gbFile

-

featuresString()

-

dumpAllBoolean

-

method GetmRNASequence #
GetmRNASequence(File, Feature)

get mRNA sequence

Remarks

Cut and join genomics DNA sequence for the given mRNA features.

Returns

the DNA sequence of the target mRNA gene.

field _dumpMethods #
_dumpMethods

Method delegates for feature dumping

method GbffToPTT #
GbffToPTT(IEnumerable(Of GeneTable), Int32, String)