nuget
The gene dump information from the NCBI genbank.
GeneTable
00 Remarks
(从GBK文件之中所导出来的一个基因对象的简要信息，尝试使用这个对象以csv表格的格式存储一个基因的所有的注释信息)
01 Syntax
SMRUCC.genomics.ComponentModel.Annotation.GeneTable
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| ToString | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| locus_id | 1 | 假若在GBK文件之中没有Locus_tag属性，则导出函数gbExportService.DumpEXPORT())会尝试使用GeneTable.ProteinId来替代 |
| function | 1 | The gene product function description |
| GO | 1 | The Go term id list of current protein object |
| KO | 1 | The KEGG Ortholog feature |
| CDS | 1 | 基因序列 |
| replicon_accessionID | 1 | 该蛋白质所位于的基因组的在NCBI之中的编号信息 |
| COG | 1 | The COG feature |
| geneName | 1 | |
| commonName | 1 | |
| left | 1 | |
| right | 1 | |
| strand | 1 | |
| UniprotSwissProt | 1 | |
| UniprotTrEMBL | 1 | |
| ProteinId | 1 | |
| GI | 1 | |
| InterPro | 1 | |
| species | 1 | |
| GC_Content | 1 | |
| translation | 1 | |
| transl_table | 1 | |
| length | 1 | |
| Location | 1 | |
| EC_Number | 1 | |
| type | 1 |
04 Members
locus_id
假若在GBK文件之中没有Locus_tag属性，则导出函数gbExportService.DumpEXPORT()会尝试使用GeneTable.ProteinId来替代
function
The gene product function description
GO
The Go term id list of current protein object
KO
The KEGG Ortholog feature
CDS
基因序列
replicon_accessionID
该蛋白质所位于的基因组的在NCBI之中的编号信息
Remarks
the sequence id of the target genome(replicon).
COG
The COG feature
geneName
commonName
left
right
strand
UniprotSwissProt
UniprotTrEMBL
ProteinId
GI
InterPro
species
GC_Content
translation
transl_table
length
Location
EC_Number
type
ToString()