ISequenceModel

Full name SMRUCC.genomics.SequenceModel.ISequenceModel Assembly SMRUCC.genomics.Core Members 7

The biological sequence molecular model.

00 Remarks

(蛋白质序列，核酸序列都可以使用本对象来表示)

01 Syntax

SMRUCC.genomics.SequenceModel.ISequenceModel

02 Methods

Name	Overloads	Summary
GetCompositionVector	2	Get the composition vector for a sequence model using a specific composition description.

03 Properties

Name	Overloads	Summary
SequenceData	1	Sequence data in a string type.(字符串类型的序列数据)
IsProtSource	1	This sequence is a protein type sequence?(判断这条序列是否为蛋白质序列)
Length	1	The ISequenceModel.SequenceData string length.

04 Fields

Name	Overloads	Summary
KB	1
MB	1

05 Members

method GetCompositionVector #

GetCompositionVector(IPolymerSequenceModel, IReadOnlyCollection(Of Char))

Get the composition vector for a sequence model using a specific composition description.

Parameters

Name	Type	Description
`seq`	IPolymerSequenceModel	-
`compositions`	`IReadOnlyCollection(Of Char)`	This always should be the constant string of amino acid or nucleotide.

method GetCompositionVector overload 2 #

GetCompositionVector(String, IReadOnlyCollection(Of Char))

Get the composition vector for a sequence model using a specific composition description.

Parameters

Name	Type	Description
`seq`	`String`	-
`compositions`	`IReadOnlyCollection(Of Char)`	This always should be the constant string of amino acid or nucleotide.

Returns

the generated vector size is always equals to the char set in the compositions missing value from the input char set will be set to ZERO.

property SequenceData #

SequenceData

Sequence data in a string type.(字符串类型的序列数据)

property IsProtSource #

IsProtSource

This sequence is a protein type sequence?(判断这条序列是否为蛋白质序列)

property Length #

Length

field KB #

field MB #