TaxonomyWebAPI

Full name SMRUCC.genomics.Assembly.NCBI.Entrez.TaxonomyWebAPI Assembly SMRUCC.genomics.Core Members 3

Automatically Getting The Ncbi Taxonomy Id From The Genbank Identifier

The question is whether, given a (long) list of Genbank identifiers, is possible to get the ncbi taxonomy identifier for each one. I know it may seem very easy, but I have not found any web service which makes this, and I wouldn't like to do this manually.

01 Syntax

SMRUCC.genomics.Assembly.NCBI.Entrez.TaxonomyWebAPI

02 Methods

Name	Overloads	Summary
efetch	2	NCBI efetch can use an accession number instead of a gi.

03 Fields

Name	Overloads	Summary
API	1

04 Members

method efetch #

efetch(String, String)

NCBI efetch can use an accession number instead of a gi. and the XML/Fasta returned by efetch contains the taxonomy-ID:

Parameters

Name	Type	Description
`gi`	`String`	-

field API #

API

method efetch #

efetch(IEnumerable(Of String), String, Boolean)