nuget
Methods for some nucleotide utility.
LocusExtensions
01 Syntax
SMRUCC.genomics.ComponentModel.Loci.LocusExtensions
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| MergeJoins | 1 | 直接合并相邻的一个位点集合到一个新的更加长的位点 |
| GetRelationship | 2 | Gets the location relationship of two loci segments. |
| GetStrand | 1 | Convert the string value type nucleotide strand information description data into a Strands enumerate data. |
| TryParse | 1 | Try parse NCBI sequence dump location/NucleotideLocation.ToString() dump location. |
| tryParseInternal | 1 | 388739 ==> 389772 #Forward 388739~389772#Forward |
| Equals | 2 | One site is reference to the same location as another loci site it does in a given offset range? |
03 Members
MergeJoins``1(
IEnumerable(Of ``0))直接合并相邻的一个位点集合到一个新的更加长的位点
Type Parameters
| Name | Description |
|---|---|
TLocation |
Parameters
| Name | Type | Description |
|---|---|---|
grouped | IEnumerable(Of ``0) | 其实在这里是直接将最小的左端和最大的右端合并构成一个更大范围的location |
Gets the location relationship of two loci segments.
Remarks
(判断获取两个位点片段之间的位置关系，请注意，这个函数只依靠左右位置来判断关系， 假若对核酸链的方向有要求在调用本函数之前请确保二者在同一条链之上)
Parameters
| Name | Type | Description |
|---|---|---|
lcl | Location | 在计算之前请先调用Location.Normalization()方法来修正 |
GetRelationship(NucleotideLocation, NucleotideLocation)
Gets the location relationship of two loci segments.
Remarks
(判断获取两个位点片段之间的位置关系，请注意，这个函数只依靠左右位置来判断关系， 假若对核酸链的方向有要求在调用本函数之前请确保二者在同一条链之上)
Parameters
| Name | Type | Description |
|---|---|---|
lcl | NucleotideLocation | 在计算之前请先调用Location.Normalization()方法来修正 |
GetStrand(
String)Convert the string value type nucleotide strand information description data into a Strands enumerate data.
Parameters
| Name | Type | Description |
|---|---|---|
str | String | 从文本文件之中所读取出来关于链方向的字符串描述数据 |
TryParse(
String)Try parse NCBI sequence dump location/NucleotideLocation.ToString() dump location.
Parameters
| Name | Type | Description |
|---|---|---|
loci | String | - |
tryParseInternal(
String) 388739 ==> 389772 #Forward
388739~389772#ForwardParameters
| Name | Type | Description |
|---|---|---|
input | String | - |
这个函数在LocusExtensions.Equals()函数的基础之上还添加了对链方向的判断
Parameters
| Name | Type | Description |
|---|---|---|
site | NucleotideLocation | - |
loci | NucleotideLocation | - |
allowedOffset | Int32 | - |
One site is reference to the same location as another loci site it does in a given offset range?
Parameters