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API Docs / SMRUCC.genomics.Data.RCSB.PDB

SMRUCC.genomics.Data.RCSB.PDB 1.0.9762.7562.

Namespaces 6 Types 29 Members 169

01 Namespaces

SMRUCC.genomics.Data.RCSB.PDB

TypeSummary Members
AminoAcid 氨基酸残基 5
ComplexGenerator Helper module for generate protein complex from the autodock vina docking result 2
CovalentRadii 13
Parser 1
PDB The RCSB PDB file format is a standardized text-based format used to represent 3D structural data of biological macromolecules, such as proteins, nucleic acids, and viruses. 7
PdbExport PDB File Format The Protein Data Bank (PDB) format provides a standard representation for macromolecular structure data derived from X-ray diffraction and NMR studies. 1
ProteinChain 1

SMRUCC.genomics.Data.RCSB.PDB.Keywords

TypeSummary Members
Atom structure data model 3
AtomUnit the amino acid residue/atom model 6
Author the author list of the pdb file 4
CONECT PDB文件中的CONECT字段用于明确指定原子间的特殊连接关系 CONECT记录提供了原子之间除标准共价键以外的特定连接信息，例如二硫键、配位键、氢键（在某些情况下）、盐桥， 以及非标准残基（如辅因子、抑制剂）内部的键合关系或它们与蛋白质/核酸之间的连接。 0
Header the pdb file header description information 7
Het 非标准残基注释 1
HetName 2
Keyword A general base class of the keyword section inside the pdb file. 25
Remark the pdb remark keyword data 5
SEQADV Sequence Advisory 2
Source 4
Spatial3D Axis information 4
Terminator The chain model terminator flag 7
Title pdb file title description information 4

SMRUCC.genomics.Data.RCSB.PDB.Keywords.Het

TypeSummary Members
HETRecord 6

SMRUCC.genomics.Data.RCSB.PDB.Keywords.HETATM

TypeSummary Members
HETATMRecord 表示解析后的HETATM记录信息 10

SMRUCC.genomics.Data.RCSB.PDB.PDBML

TypeSummary Members
PdbML PDBML/XML File Format The Protein Data Bank Markup Language (PDBML) provides a representation of PDB data in XML format. 3

SMRUCC.genomics.Data.RCSB.PDB.Structures

TypeSummary Members
Atom The unified molecular atom model for the PDB/SDF structure readers. 18
Bond The covalent bond between two atom sites. 8
Molecule A molecule (or a collection of protein chains) topology model. 6
PdbLineParser The fixed-column parser of the PDB ATOM/HETATM records. 6
StructureIO The lightweight PDB structure file reader. 8