Installer

Full name SMRUCC.genomics.Data.Installer Assembly SMRUCC.genomics.Data.Repository Members 4

01 Syntax

SMRUCC.genomics.Data.Installer

02 Methods

Name	Overloads	Summary
Install	1	这个函数主要是进行创建数据库的索引文件
BuildNameHash	1	key: GeneInfo.name, GeneInfo.locus_tag
BuildLocusHash	1	key: GeneInfo.locus_tag
GetsiRNATargetSeqs	1	Query target nt sequence

03 Members

method Install #

Install(String, Boolean)

这个函数主要是进行创建数据库的索引文件

Parameters

Name	Type	Description
`DIR`	`String`	Extract location of file: all.gbk.tar.gz from NCBI FTP website.

method BuildNameHash #

BuildNameHash(IEnumerable(Of GeneInfo), GenbankIndex)

Parameters

Name	Type	Description
`source`	`IEnumerable(Of GeneInfo)`	-
`x`	GenbankIndex	-

method BuildLocusHash #

BuildLocusHash(IEnumerable(Of GeneInfo), GenbankIndex)

Parameters

Name	Type	Description
`source`	`IEnumerable(Of GeneInfo)`	-
`x`	GenbankIndex	-

method GetsiRNATargetSeqs #

GetsiRNATargetSeqs(IEnumerable(Of Interaction), Genbank)

Query target nt sequence

Parameters

Name	Type	Description
`siRNAtarget`	`IEnumerable(Of Interaction)`	这个应该是通过对`Interaction.Organism`Group之后所得到的数据
`repo`	Genbank	-