nuget
helper for get reaction model from sabio-rk SbmlDocument dataset
SBMLInternalIndexer
01 Syntax
SMRUCC.genomics.Data.SABIORK.SBML.SBMLInternalIndexer
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| GetKeggReactionId | 1 | try to get kegg reaction id from the given sabio-rk reaction model |
| getKineticLaw | 1 | 获取得到反应过程对应的动力学函数 |
| getEnzymes | 1 | try to get enzyme molecules from a given reaction model |
03 Fields
| Name | Overloads | Summary |
|---|---|---|
| compartments | 1 | a list of the sub-cellular compartments |
| species | 1 | a list of the metabolites |
| keggCompounds | 1 | mapping of the kegg metabolites |
04 Members
GetKeggReactionId(SBMLReaction)
try to get kegg reaction id from the given sabio-rk reaction model
Parameters
| Name | Type | Description |
|---|---|---|
react | SBMLReaction | - |
getKineticLaw(
String)获取得到反应过程对应的动力学函数
Parameters
| Name | Type | Description |
|---|---|---|
id | String | - |
getEnzymes(SBMLReaction)
try to get enzyme molecules from a given reaction model
Parameters
| Name | Type | Description |
|---|---|---|
react | SBMLReaction | - |
compartments
a list of the sub-cellular compartments
species
a list of the metabolites
keggCompounds
mapping of the kegg metabolites