nuget
BlastOutputParser
01 Syntax
SMRUCC.genomics.Data.Xfam.Pfam.Pipeline.LocalBlast.BlastOutputParser
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| ParseDomainQuery | 1 | PfamA as query, alignment with protein sequence as subjects |
| ParseProteinQuery | 1 | The protein sequence as query input, alignment with pfamA domain sequence as subjects. |
03 Members
ParseDomainQuery(
Query)PfamA as query, alignment with protein sequence as subjects
Remarks
这个方向的比较结果比较准确，但是后续会面临一个数据量比较大的按照蛋白编号分组的问题出现 在这里一个query就是一个pfam结构域
Parameters
| Name | Type | Description |
|---|---|---|
query | Query | - |
ParseProteinQuery(
Query)The protein sequence as query input, alignment with pfamA domain sequence as subjects.
Remarks
这个只需要解析query就好了，不需要做group就可以构建出一条蛋白的结构域注释结果 在这里，一个hit，就是一个pfam结构域
Parameters
| Name | Type | Description |
|---|---|---|
query | Query | - |