nuget
The GCModeller VirtualCell dynamics engine module
Engine
01 Syntax
SMRUCC.genomics.GCModeller.ModellingEngine.BootstrapLoader.Engine.Engine
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| AttachBiologicalStorage | 1 | Attach the biological data storage driver |
| SetCopyNumbers | 2 | set gene copy numbers |
| MakeKnockout | 1 | should be call after the model was loaded, via function Engine.SetModel()) or Engine.LoadModel()) |
| Reset | 1 | Reset the reactor engine. |
03 Properties
04 Members
AttachBiologicalStorage(
IOmicsDataAdapter)Attach the biological data storage driver
Parameters
| Name | Type | Description |
|---|---|---|
driver | IOmicsDataAdapter | - |
SetCopyNumbers(
Int32)set all genes its copy number to a given value
Parameters
| Name | Type | Description |
|---|---|---|
copyNum | Int32 | - |
SetCopyNumbers(
Dictionary(Of String, Int32))set gene copy numbers
Parameters
| Name | Type | Description |
|---|---|---|
copyNum | Dictionary(Of String, Int32) | a tuple list of [gene_id => copyNumber] |
MakeKnockout(
IEnumerable(Of String))should be call after the model was loaded, via function Engine.SetModel() or Engine.LoadModel()
Parameters
| Name | Type | Description |
|---|---|---|
knockouts | IEnumerable(Of String) | - |
Reset
Reset the reactor engine. (Do reset of the biological mass contents)
dynamics
The argument of the cellular flux dynamics
initials
The compound map definition and the initial status