Definition

Full name SMRUCC.genomics.GCModeller.ModellingEngine.BootstrapLoader.Definitions.Definition Assembly SMRUCC.genomics.GCModeller.ModellingEngine.BootstrapLoader Members 9

The definition for the mass environment for run the simulation

00 Remarks

因为物质编号可能会来自于不同的数据库，所以会需要使用这个对象将一些关键的物质映射为计算引擎所能够被识别的对象

01 Syntax

SMRUCC.genomics.GCModeller.ModellingEngine.BootstrapLoader.Definitions.Definition

02 Methods

Name	Overloads	Summary
MetaCyc	1
KEGG	1	Get the KEGG compound Definition

03 Properties

Name	Overloads	Summary
ATP	1
Water	1
NucleicAcid	1	nucleotide metabolite id mapping for construct of the RNA molecule in the transcription process.
AminoAcid	1	amino acid metabolite id mapping for construct of the polypeptide in translation process
GenericCompounds	1	define the id mapping to some general compounds
CultureMedium	1	the compartment id of the Culture medium
status	1	define of the cell initial status.

04 Members

method MetaCyc #

MetaCyc(IEnumerable(Of String), Double)

Parameters

Name	Type	Description
`allCompounds`	`IEnumerable(Of String)`	-
`initMass`	`Double`	NaN for random value

method KEGG #

KEGG(IEnumerable(Of String), Double)

Get the KEGG compound Definition

Parameters

Name	Type	Description
`initMass`	`IEnumerable(Of String)`	NaN for random value

property ATP #

ATP

property Water #

Water

property NucleicAcid #

NucleicAcid

nucleotide metabolite id mapping for construct of the RNA molecule in the transcription process.

property AminoAcid #

AminoAcid

amino acid metabolite id mapping for construct of the polypeptide in translation process

property GenericCompounds #

GenericCompounds

define the id mapping to some general compounds

property CultureMedium #

CultureMedium

the compartment id of the Culture medium

property status #

status

define of the cell initial status.

Returns

[cell_id => [metabolite => content data]]