nuget
InteropService to the local blast program.(对本地BLAST程序的中间服务)
InteropService
01 Syntax
SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.InteropService.InteropService
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| GetLastLogFile | 1 | Get the blast program output result file from the last BLAST operation. |
| Blastp | 1 | Generate the command line arguments of the program blastp.(生成blastp程序的命令行参数) |
| Blastn | 1 | Generate the command line arguments of the program blastn.(生成blastn程序的命令行参数) |
| FormatDb | 1 | Format theta target fasta sequence database for the blast search. |
| TryInvoke | 1 | Try invoke the blast program based on its program name as the executable file name. |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| MolTypeProtein | 1 | Gets the command line parameter of the protein sequence molecular type.(获取蛋白质分子序列的命令行参数的值) |
| MolTypeNucleotide | 1 | Gets the command line parameter of the nucleotide sequence molecular type.(获取核酸序列类型的分子序列的命令行参数的值) |
| LastBLASTOutputFilePath | 1 | Get the last blast operation output log file path.(获取上一次BLAST操作的输出文件的文件名) |
04 Members
GetLastLogFile
Get the blast program output result file from the last BLAST operation. Filepath: InteropService.LastBLASTOutputFilePath. (获取上一个BLAST操作所输出的结果日志文件)
Blastp(
String, String, String, String)Generate the command line arguments of the program blastp.(生成blastp程序的命令行参数)
Parameters
| Name | Type | Description |
|---|---|---|
InputQuery | String | The target sequence FASTA file.(包含有目标待比对序列的FASTA文件) |
TargetSubjectDb | String | The selected database that to aligned.(将要进行比对的目标数据库) |
Output | String | 结果文件 |
e | String | The E-value |
Blastn(
String, String, String, String)Generate the command line arguments of the program blastn.(生成blastn程序的命令行参数)
Parameters
| Name | Type | Description |
|---|---|---|
Input | String | The target sequence FASTA file.(包含有目标待比对序列的FASTA文件) |
TargetDb | String | The selected database that to aligned.(将要进行比对的目标FASTA数据库的文件名) |
Output | String | 结果文件 |
e | String | The E-value |
FormatDb(
String, String)Format theta target fasta sequence database for the blast search.
Parameters
| Name | Type | Description |
|---|---|---|
Db | String | The name of the target formated db.(目标格式化数据库的名称) |
dbType | String | Database type for the target sequence database(目标序列数据库的分子类型) |
TryInvoke(
String, String, String, String, String)Try invoke the blast program based on its program name as the executable file name.
Parameters
| Name | Type | Description |
|---|---|---|
Program | String | The program file name |
Query | String | - |
Subject | String | - |
Evalue | String | - |
Output | String | - |
MolTypeProtein
Gets the command line parameter of the protein sequence molecular type.(获取蛋白质分子序列的命令行参数的值)
MolTypeNucleotide
Gets the command line parameter of the nucleotide sequence molecular type.(获取核酸序列类型的分子序列的命令行参数的值)
LastBLASTOutputFilePath
Get the last blast operation output log file path.(获取上一次BLAST操作的输出文件的文件名)