KOAssignment

Full name SMRUCC.genomics.Interops.NCBI.Extensions.Pipeline.KOAssignment Assembly SMRUCC.genomics.Interops.NCBI.Extensions Members 4

01 Syntax

SMRUCC.genomics.Interops.NCBI.Extensions.Pipeline.KOAssignment

02 Methods

Name	Overloads	Summary
KOAssignmentSBH	1	在这里主要是将hit_name之中的KO编号提取出来就好了
KOassignmentBBH	1	KO number assignment in bbh method
populateHitGroup	1	Populate hit group of each query
pickDrfBesthit	1	因为在导出结果的时候是没有取tophit的，所以会在物种间或者物种内存在多个重复的结果在这里对每一个query进行物种分组，取物种内最佳

03 Members

method KOAssignmentSBH #

KOAssignmentSBH(IEnumerable(Of BestHit), Boolean)

在这里主要是将hit_name之中的KO编号提取出来就好了

Parameters

Name	Type	Description
`result`	`IEnumerable(Of BestHit)`	-
`removesNohit`	`Boolean`	Removes all of the alignment that produce hit not found...

method KOassignmentBBH #

KOassignmentBBH(IEnumerable(Of BestHit), IEnumerable(Of BestHit))

KO number assignment in bbh method

Parameters

Name	Type	Description
`drf`	`IEnumerable(Of BestHit)`	Besthits in direction forward
`drr`	`IEnumerable(Of BestHit)`	Besthits in direction reverse

method populateHitGroup #

populateHitGroup(IEnumerable(Of BestHit))

Populate hit group of each query

Parameters

Name	Type	Description
`drr`	`IEnumerable(Of BestHit)`	-

method pickDrfBesthit #

pickDrfBesthit(IEnumerable(Of BestHit), Func(Of BestHit, String), Func(Of BestHit, String))

因为在导出结果的时候是没有取tophit的，所以会在物种间或者物种内存在多个重复的结果在这里对每一个query进行物种分组，取物种内最佳

Parameters

Name	Type	Description
`drf`	`IEnumerable(Of BestHit)`	-