BlastpOutputReader

Full name SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.BlastpOutputReader Assembly SMRUCC.genomics.Interops.NCBI.Extensions Members 4

01 Syntax

SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.BlastpOutputReader

02 Methods

Name	Overloads	Summary
QueryBlockIterates	1	每次只生成一个query的文本内容数据
RunParser	1	Calls the blastp parser for the blast+ alignment result.
subjectParser	1

03 Fields

Name	Overloads	Summary
REGEX_BLASTP_SCORE	1

04 Members

method QueryBlockIterates #

QueryBlockIterates(String, Encodings)

每次只生成一个query的文本内容数据

Parameters

Name	Type	Description
`path$`	`String`	-
`encoding`	`Encodings`	-

method RunParser #

RunParser(String, Boolean, Encodings)

Calls the blastp parser for the blast+ alignment result.

Parameters

Name	Type	Description
`path$`	`String`	-
`encoding`	`Boolean`	-

method subjectParser #

subjectParser(String, Boolean)

Parameters

Name	Type	Description
`block`	`String`	-
`fast`	`Boolean`	fast模式下,将不会解析匹配的具体序列匹配内容,只解析出query,subject和具体的得分

field REGEX_BLASTP_SCORE #

REGEX_BLASTP_SCORE