nuget
基因组代谢酶注释结果
GenomeVector
01 Syntax
SMRUCC.genomics.Interops.NCBI.Extensions.Pipeline.GenomeVector
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| GetHierarchicalECNumberTerms | 2 | used for processing of the ec number terms, make the count of the hierarchical ec number terms by summing the count of the specific ec number terms |
| GroupByTaxonomy | 1 | Make union of the taxonomy assembly contig result |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| assembly_id | 1 | the unique reference id of the genome, usually is the genbank assembly id, but it can be any string that can uniquely identify this genome in the dataset, and it should be consis… |
| taxonomy | 1 | the genome taxonomy information, it can be the taxonomic name of this genome, or the taxonomic id of this genome, but it should be consistent with the taxonomy information used i… |
| terms | 1 | annotated terms inside this genome, the key is the term name, and the value is the count of this term in this genome |
| size | 1 | annotated gene count |
04 Members
GetHierarchicalECNumberTerms
used for processing of the ec number terms, make the count of the hierarchical ec number terms by summing the count of the specific ec number terms
GetHierarchicalECNumberTerms(
Dictionary(Of String, Int32))used for processing of the ec number terms, make the count of the hierarchical ec number terms by summing the count of the specific ec number terms
GroupByTaxonomy(
IEnumerable(Of GenomeVector), Int32)Make union of the taxonomy assembly contig result
Parameters
| Name | Type | Description |
|---|---|---|
vectors | IEnumerable(Of GenomeVector) | - |
size_cutoff | Int32 | test of the contigby gene size cutoff. |
assembly_id
the unique reference id of the genome, usually is the genbank assembly id, but it can be any string that can uniquely identify this genome in the dataset, and it should be consistent with the assembly id used in the annotation result, so that we can link the annotation result to the taxonomy information of this genome
taxonomy
the genome taxonomy information, it can be the taxonomic name of this genome, or the taxonomic id of this genome, but it should be consistent with the taxonomy information used in the annotation result, so that we can link the annotation result to the taxonomy information of this genome
terms
annotated terms inside this genome, the key is the term name, and the value is the count of this term in this genome
size
annotated gene count