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API Docs / SMRUCC.genomics.Interops.NCBI.Extensions / HitCollection

HitCollection

Full name SMRUCC.genomics.Interops.NCBI.Extensions.Tasks.Models.HitCollection Assembly SMRUCC.genomics.Interops.NCBI.Extensions Members 6

A collection of hits for the target query protein.

00 Remarks

其实这个就是相当于一个KEGG里面的SSDB BBH结果文件

01 Syntax

SMRUCC.genomics.Interops.NCBI.Extensions.Tasks.Models.HitCollection

02 Methods

NameOverloadsSummary
orderBySp 1 按照菌株排序
Take 1 按照物种编号取出数据构建一个新的bbh集合

03 Properties

NameOverloadsSummary
QueryName 1 The locus tag of the query protein.(主键蛋白质名称)
description 1 Query protein functional annotation.
hits 1 Query hits protein.
Hit 1 Gets hits protein tag inform by hit protein locus_tag

04 Members

method orderBySp #
orderBySp

按照菌株排序

method Take #
Take(String())

按照物种编号取出数据构建一个新的bbh集合

Parameters
NameTypeDescription
spTagsString()

-

property QueryName #
QueryName

The locus tag of the query protein.(主键蛋白质名称)

property description #
description

Query protein functional annotation.

property hits #
hits

Query hits protein.

property Hit #
Hit(String)

Gets hits protein tag inform by hit protein locus_tag

Parameters
NameTypeDescription
hitNameString

-