nuget
a single protein family discovered by the unsupervised clustering pipeline
ProteinFamily
01 Syntax
SMRUCC.genomics.Model.MotifGraph.ProteinStructure.FamilyCluster.ProteinFamily
02 Properties
| Name | Overloads | Summary |
|---|---|---|
| familyId | 1 | the integer family id assigned by the Louvain community detection step |
| members | 1 | the titles of every member protein sequence |
| memberSequences | 1 | the member protein sequences (title + sequence data) |
| reference | 1 | the selected reference sequence: the member with the fewest edits in the MSA |
| msa | 1 | the multiple sequence alignment of the family (may be nothing if the family has a single member) |
03 Members
familyId
the integer family id assigned by the Louvain community detection step
members
the titles of every member protein sequence
memberSequences
the member protein sequences (title + sequence data)
reference
the selected reference sequence: the member with the fewest edits in the MSA
msa
the multiple sequence alignment of the family (may be nothing if the family has a single member)