ReactionNetworkBuilder

Full name SMRUCC.genomics.Model.Network.KEGG.ReactionNetwork.ReactionNetworkBuilder Assembly SMRUCC.genomics.Model.Network.KEGG Members 4

这个模块是针对一组给定的特定的代谢物编号列表生成对应的小分子代谢物互做网络图

01 Syntax

SMRUCC.genomics.Model.Network.KEGG.ReactionNetwork.ReactionNetworkBuilder

02 Methods

Name	Overloads	Summary
.ctor	1
createEdges	1	两个代谢物之间直接创建一条边
compoundEdge	1	two compound is connected via a reaction link, the link id is the reaction id
enzymeBridgedEdges	1	tow compound is connected via a enzyme gene node

03 Members

method .ctor #

#ctor(IEnumerable(Of ReactionTable), IEnumerable(Of NamedValue(Of String)), Boolean, Boolean, EdgeFilterEngine, Boolean)

Parameters

Name Type Description

Name	Type	Description
`br08901`	`IEnumerable(Of ReactionTable)`	代谢反应数据
`compounds`	`IEnumerable(Of NamedValue(Of String))`	KEGG化合物编号，`{kegg_id => compound name}`
`enzymeBridged`	`Boolean`	This option will affects the network connected style: true: compound -- enzyme -- compound false: compound -- compound

br08901

IEnumerable(Of ReactionTable)

代谢反应数据

compounds

IEnumerable(Of NamedValue(Of String))

KEGG化合物编号，{kegg_id => compound name}

enzymeBridged

Boolean

This option will affects the network connected style:

method createEdges #

createEdges(String(), Node, Node)

两个代谢物之间直接创建一条边

Parameters

method compoundEdge #

compoundEdge(String(), Node, Node)

two compound is connected via a reaction link, the link id is the reaction id

Parameters

method enzymeBridgedEdges #

enzymeBridgedEdges(String(), Node, Node)

tow compound is connected via a enzyme gene node

Parameters