nuget
因为同一种代谢物或者代谢反应或者酶分子可能会出现在多个代谢途径之中 则这个模块就是通过将目标类型在代谢途径中的归属通过覆盖度进行简单计算
MapAssignment
01 Syntax
SMRUCC.genomics.Model.Network.KEGG.PathwayMaps.MapAssignment
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| MapAssignmentByCoverage | 1 | Biological object map assignment by simple coverage calculation |
03 Members
MapAssignmentByCoverage(
IEnumerable(Of String), IEnumerable(Of NamedCollection(Of String)), Boolean, Double, Index(Of String))Biological object map assignment by simple coverage calculation
Parameters
| Name | Type | Description |
|---|---|---|
objects | IEnumerable(Of String) | 实际的目标集合 |
maps | IEnumerable(Of NamedCollection(Of String)) | Pathway map作为objects cluster的定义 |
coverageCutoff | Boolean | coverage结果值低于这个阈值的代谢通路将不会被抛出，这个参数默认为零，即不进行coverage相关的筛选 |