BuilderBase

Full name SMRUCC.genomics.Model.Network.KEGG.ReactionNetwork.BuilderBase Assembly SMRUCC.genomics.Model.Network.KEGG Members 7

01 Syntax

SMRUCC.genomics.Model.Network.KEGG.ReactionNetwork.BuilderBase

02 Methods

03 Fields

Name	Overloads	Summary
blue	1	正常的通过这个模型对象的构造函数创建的代谢物节点的颜色为蓝色
gray	1	通过expansion操作添加的额外的代谢物的节点的颜色为灰色
commonIgnores	1	some primary metabolite connected too much reactions, ignores these metabolites
nodes	1	从输入的数据之中构建出网络的节点列表

04 Members

method .ctor #

#ctor(IEnumerable(Of ReactionTable), IEnumerable(Of NamedValue(Of String)), Brush, Boolean, EdgeFilterEngine, Boolean)

Parameters

Name	Type	Description
`br08901`	`IEnumerable(Of ReactionTable)`	代谢反应数据
`compounds`	`IEnumerable(Of NamedValue(Of String))`	KEGG化合物编号，`{kegg_id => compound name}`

method createEdges #

createEdges(String(), Node, Node)

Parameters

method BuildModel #

BuildModel(Boolean, Dictionary(Of String, String()), Boolean, Boolean)

利用代谢反应的摘要数据构建出代谢物的互作网络

Parameters

Name	Type	Description
`extended`	`Boolean`	是否对结果进行进一步的拓展，以获取得到一个连通性更加多的大网络？默认不进行拓展
`enzymeInfo`	`Dictionary(Of String, String())`	`{KO => protein names}`

field blue #

blue

正常的通过这个模型对象的构造函数创建的代谢物节点的颜色为蓝色

field gray #

gray

通过expansion操作添加的额外的代谢物的节点的颜色为灰色

field commonIgnores #

commonIgnores

some primary metabolite connected too much reactions, ignores these metabolites

field nodes #

nodes

从输入的数据之中构建出网络的节点列表