ReferenceMapRender

Full name SMRUCC.genomics.Model.Network.KEGG.GraphVisualizer.PathwayMaps.ReferenceMapRender Assembly SMRUCC.genomics.Model.Network.KEGGGraphVisualizer Members 6

01 Syntax

SMRUCC.genomics.Model.Network.KEGG.GraphVisualizer.PathwayMaps.ReferenceMapRender

02 Methods

Name	Overloads	Summary
getReactionNames	1	geneName -> EC number -> reactionId
Render	2	将完成node和edge布局操作的网络模型进行渲染
mixEdgeColor	1
GetNodeLabel	2	Converts the KEGG compound id and reaction id as metabolite name or enzyme gene name

03 Members

method getReactionNames #

getReactionNames(Dictionary(Of String, String()))

geneName -> EC number -> reactionId

Parameters

Name	Type	Description
`reactionKOMapping`	`Dictionary(Of String, String())`	-

method Render overload 2 #

Render(XGMMLgraph, String, String, String, String, String(), String, String, Boolean, Boolean, String, Int32)

将完成node和edge布局操作的网络模型进行渲染

Parameters

Name	Type	Description
`model`	`XGMMLgraph`	-

method Render #

Render(NetworkGraph, String, String, RenderStyle, String, String, String, Boolean, Index(Of String), Dictionary(Of String, String), Int32, String, Boolean, Boolean, Dictionary(Of String, String()), String, Drivers, Int32)

将完成node和edge布局操作的网络模型进行渲染

method mixEdgeColor #

mixEdgeColor(NetworkGraph, RenderStyle, Dictionary(Of String, Int32))

Parameters

Name	Type	Description
`g`	`NetworkGraph`	-
`renderStyle`	`RenderStyle`	-
`degrees`	`Dictionary(Of String, Int32)`	`Statistics.ComputeNodeDegrees()`

method GetNodeLabel #

GetNodeLabel(Dictionary(Of String, String), Dictionary(Of String, String()))

Converts the KEGG compound id and reaction id as metabolite name or enzyme gene name

Parameters

Name	Type	Description
`compoundNames`	`Dictionary(Of String, String)`	-
`reactionKOMapping`	`Dictionary(Of String, String())`	-

method GetNodeLabel overload 2 #

GetNodeLabel(Dictionary(Of String, String), Dictionary(Of String, String))

Converts the KEGG compound id and reaction id as metabolite name or enzyme gene name

Parameters

Name	Type	Description
`compoundNames`	`Dictionary(Of String, String)`	-
`reactionNames`	`Dictionary(Of String, String)`	-