nuget
Scatter plots are useful for showing the position of a probe, such as SNP data, on the genome.
Scatter plots use the same data format as line plots, histograms and heat maps.
#chr start end value [options]
hs5 50 75 0.75ScatterPlot
00 Remarks
The size and shape of the points are controlled by the glyph and glyph_size parameters.
The available glyph shapes are:
circlerectangletrianglecrossplussquare
(see the glyph reference in the circos tutorials for the complete list)
The default values of this plot are taken from the official template etc/tracks/scatter.conf in the circos distribution.
01 Syntax
SMRUCC.genomics.Visualize.Circos.Configurations.Nodes.Plots.ScatterPlot
02 Properties
| Name | Overloads | Summary |
|---|---|---|
| glyph | 1 | Shape of the glyph: circle / rectangle / triangle / cross / plus / square |
| glyph_size | 1 | Size of the glyph, in pixels. |
| color | 1 | The primary color parameter of the glyph. |
| max_gap | 1 | 当相邻的数据点之间的间隔大于所给定的阈值的时候，不再将这些数据点连接起来 |
| type | 1 |
03 Members
glyph
Shape of the glyph: circle / rectangle / triangle / cross / plus / square
glyph_size
Size of the glyph, in pixels.
color
The primary color parameter of the glyph. (与继承得到的TrackPlot.fill_color是同义参数，二者使用任意一个即可)
max_gap
当相邻的数据点之间的间隔大于所给定的阈值的时候，不再将这些数据点连接起来
Remarks
For example max_gap = 1u is useful to automatically skip gaps larger than a given size, in this way it isn't necessary to split data into blocks that reflect absence of data over a large region (e.g. centromere, heterochromatin).
type