nuget
IdeogramBlock
01 Syntax
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| Build | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| thickness | 1 | thickness (px) of chromosome ideogram Thickness of ideograms, which can be absolute (e.g. |
| stroke_color | 1 | ideogram border color |
| fill | 1 | Ideograms can be drawn as filled, outlined, or both. |
| fill_color | 1 | the default chromosome color is set here and any value # defined in the karyotype file overrides it |
| radius | 1 | Fractional radius position of chromosome ideogram within image. |
| label_font | 1 | see etc/fonts.conf for list of font names |
| label_radius | 1 | if ideogram radius is constant, and you'd like labels close to image edge, use the dims() Function To access the size Of the image label_radius = dims(image,radius) - 60p |
| band_stroke_thickness | 1 | cytogenetic bands |
| show_bands | 1 | show_bands determines whether the outline of cytogenetic bands # will be seen |
| fill_bands | 1 | in order to fill the bands with the color defined in the karyotype # file you must set fill_bands |
| stroke_thickness | 1 | |
| show_label | 1 | |
| label_size | 1 | |
| label_parallel | 1 | |
| label_case | 1 | |
| Spacing | 1 |
04 Members
thickness (px) of chromosome ideogram
Thickness of ideograms, which can be absolute (e.g. pixels, "p" suffix) Or relative ("r" suffix). When relative, it Is a fraction Of image radius.
ideogram border color
Ideograms can be drawn as filled, outlined, or both. When filled, the color will be taken from the last field In the karyotype file, Or Set by chromosomes_colors. Color names are discussed In
http://www.circos.ca/documentation/tutorials/configuration/configuration_files
When stroke_thickness=0p Or If the parameter Is missing, the ideogram Is has no outline And the value Of stroke_color Is Not used.
the default chromosome color is set here and any value
defined in the karyotype file overrides it
Fractional radius position of chromosome ideogram within image.
Spacing between ideograms. Suffix "r" denotes a relative value. It Is relative To circle circumference (e.g. space Is 0.5% Of circumference).
see etc/fonts.conf for list of font names
if ideogram radius is constant, and you'd like labels close to image edge, use the dims() Function To access the size Of the image
label_radius = dims(image,radius) - 60p
cytogenetic bands
show_bands determines whether the outline of cytogenetic bands
will be seen
in order to fill the bands with the color defined in the karyotype
file you must set fill_bands
Int32, String)