LinePlot

Full name SMRUCC.genomics.Visualize.Circos.Configurations.Nodes.Plots.Lines.LinePlot Assembly SMRUCC.genomics.Visualize.Circos.Core Members 2

Line plots are useful for showing values associated with a position on the ideogram, such as sequence conservation scores, or values derived from a sliding window scan of the genome.

Line plots use the same data format as scatter plots, histograms and heat maps.

 #chr start end value [options]
 hs5 50 75 0.75

00 Remarks

The default values of this plot are taken from the official template etc/tracks/line.conf in the circos distribution.

01 Syntax

SMRUCC.genomics.Visualize.Circos.Configurations.Nodes.Plots.Lines.LinePlot

02 Properties

Name	Overloads	Summary
color	1	The line color parameter
max_gap	1	当相邻的数据点之间的间隔大于所给定的阈值的时候，不再将这些数据点连接起来

03 Members

property color #

color

The line color parameter

property max_gap #

max_gap

当相邻的数据点之间的间隔大于所给定的阈值的时候，不再将这些数据点连接起来

Remarks

For example max_gap = 1u splits the line into separate segments whenever two neighbouring data points are separated by a gap larger than one chrom osome unit.