nuget
BlastResultExtensions
01 Syntax
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| GenerateBlastnAlignment | 1 | The blast result alignment will be mapping on the circos plot circle individual as the highlights element in the circos plot. |
| GetGenomeCircle | 1 | The directory which contains the completed PTT data: *.ptt, *.rnt, *.fna and so on which you can download from the NCBI FTP website. |
| __createGenomeCircle | 1 | Creates the circos gene circle from the PTT database which is defined in the *.ptt/*.rnt file, and you can download this directory from the NCBI FTP website. |
03 Members
Circos, AlignmentTable, Double, Double, IdentityColors)The blast result alignment will be mapping on the circos plot circle individual as the highlights element in the circos plot.
| Name | Type | Description |
|---|---|---|
doc | Circos | - |
table | AlignmentTable | The ncbi blast alignment result table object which can be achive from the NCBI website. |
r1 | Double | The max radius of the alignment circles. |
rInner | Double | - |
String, String, String)The directory which contains the completed PTT data: *.ptt, *.rnt, *.fna and so on which you can download from the NCBI FTP website.
| Name | Type | Description |
|---|---|---|
PTT | String | The directory which contains the completed PTT data: .ptt, .rnt, *.fna and so on which you can download from the NCBI FTP website. |
myvaCog | String | The csv file path of the myva cog value which was export from the alignment between the bacteria genome And the myva cog database Using the NCBI blast package In the GCModeller. |
defaultColor | String | The default color of the gene which is not assigned to any COG will be have. |
PTTDbLoader, IEnumerable(Of MyvaCOG), String)Creates the circos gene circle from the PTT database which is defined in the *.ptt/*.rnt file, and you can download this directory from the NCBI FTP website.
| Name | Type | Description |
|---|---|---|
PTT | PTTDbLoader | - |
COG | IEnumerable(Of MyvaCOG) | - |
defaultColor | String | - |