ExpressionPattern

Full name SMRUCC.genomics.Visualize.ExpressionPattern.ExpressionPattern Assembly SMRUCC.genomics.Visualize Members 7

The cmeans expression cluster result

01 Syntax

SMRUCC.genomics.Visualize.ExpressionPattern.ExpressionPattern

02 Methods

Name	Overloads	Summary
GetPartitionMatrix	1	function for split current expression pattern matrix as the membership blocks
CMeansCluster	1
ToSummaryText	1

03 Properties

Name	Overloads	Summary
Patterns	1	The fuzzy cmeans cluster result matrix
sampleNames	1	the sample id for the cmeans cluster dataset vector
dim	1	plot dimension layout information
centers	1	center feature points

04 Members

method GetPartitionMatrix #

GetPartitionMatrix(Double, Int32)

function for split current expression pattern matrix as the membership blocks

Remarks

the tag value in the generated expression matrix object is the pattern id

Parameters

Name	Type	Description
`membershipCutoff`	`Double`	-
`topMembers`	`Int32`	-

method CMeansCluster #

CMeansCluster(Matrix, Int32(), Double, Double)

Parameters

Name	Type	Description
`matrix`	`Matrix`	-
`dim`	`Int32()`	`[row, columns]`

property Patterns #

Patterns

The fuzzy cmeans cluster result matrix

property sampleNames #

sampleNames

the sample id for the cmeans cluster dataset vector

property dim #

dim

plot dimension layout information

property centers #

centers

center feature points

method ToSummaryText #

ToSummaryText(Double)