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API Docs / SMRUCC.genomics.Visualize / EnrichmentCategoryHeatmap

EnrichmentCategoryHeatmap

Full name SMRUCC.genomics.Visualize.EnrichmentCategoryHeatmap Assembly SMRUCC.genomics.Visualize Members 1

01 Syntax

SMRUCC.genomics.Visualize.EnrichmentCategoryHeatmap

02 Methods

NameOverloadsSummary
.ctor 1

03 Members

method .ctor #
#ctor(DataFrame, DataFrame, SampleInfo(), Theme, String)
Parameters
NameTypeDescription
dataDataFrame

a dataframe object that contains the molecular expression data: the row names in the dataframe is the molecule name labels and all the column fields should be the expression value in different samples.

metadataDataFrame

the metadata for the molecules of given expression data, should contains the metadata fields of:

  1. class: a character vector of the kegg class labels, example as pathway names, module names, or orthology labels
  2. logp: a numeric vector of the multiple group ANOVA test pvalue its log transform result of the molecules
  3. VIP: a numeric vector of the multiple group pls-da VIP result value for the molecules

the data field name is case-sensitive.

groupdSampleInfo()

-

themeTheme

-

kegg_classString

-