API Docs / SMRUCC.genomics.foundation.BIOM
SMRUCC.genomics.foundation.BIOM 1.0.9762.7562.
Namespaces 6
Types 14
Members 38
01 Namespaces
SMRUCC.genomics.foundation.BIOM
SMRUCC.genomics.foundation.BIOM.v10
| Type | Summary |
Members |
|---|
| BIOMDataSet |
The biom file format: Version 1.0 The biom format is based on JSON to provide the overall structure for the format. |
13 |
| FloatMatrix |
BIOM json with double matrix data |
1 |
| IntegerMatrix |
BIOM json with integer matrix data |
1 |
| matrix_type |
2019-05-27 因为自带的JSON序列化函数会将枚举类型转换为对应的值，而非枚举成员的名称字符串 所以在这里就直接使用字符串常数来表示枚举了 |
2 |
| MatrixConversion |
在matrix_type.sparse和matrix_type.dense 这两种布局的矩阵之间相互转换 |
5 |
| namesOf |
<string> Table type (a controlled vocabulary) acceptable values |
7 |
| StringMatrix |
BIOM json with string matrix data |
1 |
SMRUCC.genomics.foundation.BIOM.v10.components
| Type | Summary |
Members |
|---|
| column |
主要是存储sample信息 |
0 |
| meta |
|
3 |
| row |
主要是存储OTU信息 |
0 |
SMRUCC.genomics.foundation.BIOM.v15
| Type | Summary |
Members |
|---|
| CDF |
BIOM netCDF I/O |
1 |
SMRUCC.genomics.foundation.BIOM.v20
| Type | Summary |
Members |
|---|
| HDF5 |
v2.0 BIOM hdf5 file parser |
1 |
SMRUCC.genomics.foundation.BIOM.v21
| Type | Summary |
Members |
|---|
| HDF5 |
V2.1 BIOM hdf5 file parser |
1 |
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