metpa

Full name SMRUCC.genomics.Analysis.HTS.GSEA.KnowledgeBase.Metabolism.Metpa.metpa Assembly SMRUCC.genomics.Analysis.HTS.GSEA.KnowledgeBase.Extensions Members 2

metpa symbol

00 Remarks

the pathway enrichment model contains multiple data collection:

metpa.msetList is a set of the metabolite collection in each pathway cluster model
metpa.rbcList the impact score via algorithm Topologys.rbc
metpa.dgrList the impact score via algorithm Topologys.dgr
metpa.pathIds the pathway name collection

these data is required for run topology impact enrichment analysis.

01 Syntax

SMRUCC.genomics.Analysis.HTS.GSEA.KnowledgeBase.Metabolism.Metpa.metpa

02 Methods

Name	Overloads	Summary
Enrichment	1

03 Properties

Name	Overloads	Summary
unique_count	1	the count of the metabolite inside current model

04 Members

method Enrichment #

Enrichment(IEnumerable(Of String), Topologys, Int32, Int32, Boolean, Boolean, Action(Of String))

Parameters

Name	Type	Description
`idset`	`IEnumerable(Of String)`	-
`topo`	Topologys	-
`resize`	`Int32`	-
`cutSize`	`Int32`	-
`outputAll`	`Boolean`	-
`showProgress`	`Boolean`	-
`doProgress`	`Action(Of String)`	-

Returns

the EnrichmentResult.score will be assigned with the topology impact score

property unique_count #

unique_count

the count of the metabolite inside current model