OTU

Full name SMRUCC.genomics.Analysis.Metagenome.OTU Assembly SMRUCC.genomics.Analysis.Metagenome Members 2

01 Syntax

SMRUCC.genomics.Analysis.Metagenome.OTU

02 Methods

Name	Overloads	Summary
BuildOTUClusters	1	Only works on the 16S/18S data
LoadOTUTaxonAnalysis	1	load OTU data with seperated taxonomy rank data

03 Members

method BuildOTUClusters #

BuildOTUClusters(IEnumerable(Of FastaSeq), StreamWriter, Double)

Only works on the 16S/18S data

Parameters

Name	Type	Description
`contigs`	`IEnumerable(Of FastaSeq)`	-
`similarity`	`StreamWriter`	Two sequence at least have 97% percentage similarity that can be cluster into one OTU

method LoadOTUTaxonAnalysis #

LoadOTUTaxonAnalysis(String, Boolean)

load OTU data with seperated taxonomy rank data

Parameters

Name	Type	Description
`file`	`String`	-
`tsv`	`Boolean`	-