KmerWriter

Full name SMRUCC.genomics.Analysis.Metagenome.Kmers.KmerWriter Assembly SMRUCC.genomics.Analysis.Metagenome Members 9

01 Syntax

SMRUCC.genomics.Analysis.Metagenome.Kmers.KmerWriter

02 Methods

Name	Overloads	Summary
Add	2	add sequence into database
CreateFromSequence	2	used for make processing of the small genome sequence data, example as virus or bacterial
IsValidKmer	1	检查k-mer是否仅包含标准的A, T, C, G碱基
SetKSize	1
AddSequenceID	1

03 Fields

Name	Overloads	Summary
Magic	1
Magic2	1

04 Members

method Add #

Add(IFastaProvider, UInt32)

add sequence into database

Parameters

Name	Type	Description
`seq`	`IFastaProvider`	-
`taxid`	`UInt32`	-

method Add overload 2 #

Add(ChunkedNtFasta, UInt32)

add sequence into database

Parameters

Name	Type	Description
`seq`	`ChunkedNtFasta`	-
`taxid`	`UInt32`	-

method CreateFromSequence #

CreateFromSequence(IFastaProvider, Int32, UInt32)

used for make processing of the small genome sequence data, example as virus or bacterial

Parameters

method CreateFromSequence overload 2 #

CreateFromSequence(ChunkedNtFasta, Int32, UInt32, Int32)

used for make processing of large genome sequence data, example as human genome

Parameters

method IsValidKmer #

IsValidKmer(String)

检查k-mer是否仅包含标准的A, T, C, G碱基

field Magic #

Magic

field Magic2 #

Magic2

method SetKSize #

SetKSize(Int32)

method AddSequenceID #

AddSequenceID(UInt32, String)