RunNeedlemanWunsch

Full name SMRUCC.genomics.Analysis.SequenceAlignment.GlobalAlignment.RunNeedlemanWunsch Assembly SMRUCC.genomics.Analysis.SequenceAlignment Members 2

Application of the Needleman-Wunsch Algorithm Bioinformatics 1, WS 15/16 Dr. Kay Nieselt and Alexander Seitz

Benjamin Schroeder
Jonas Ditz

01 Syntax

SMRUCC.genomics.Analysis.SequenceAlignment.GlobalAlignment.RunNeedlemanWunsch

02 Methods

Name	Overloads	Summary
RunAlign	2	Run the Needleman-Wunsch Algorithm

03 Members

method RunAlign overload 2 #

RunAlign(IPolymerSequenceModel, IPolymerSequenceModel, Double)

Run the Needleman-Wunsch Algorithm

Parameters

Name	Type	Description
`fasta1`	`IPolymerSequenceModel`	commandline arguments

Returns

This function returns the alignment score

method RunAlign #

RunAlign(FastaSeq, FastaSeq, TextWriter)

Run the Needleman-Wunsch Algorithm

Remarks

如果两条序列长度不一样，则较短的序列会被补充长度到最长的一条序列

Parameters

Name	Type	Description
`fasta1`	`FastaSeq`	commandline arguments