CDHit

Full name SMRUCC.genomics.Analysis.SequenceAlignment.CDHit Assembly SMRUCC.genomics.Analysis.SequenceAlignment Members 4

01 Syntax

SMRUCC.genomics.Analysis.SequenceAlignment.CDHit

02 Methods

Name	Overloads	Summary
.ctor	1
FindSimilar	1	implements of the CD-hit liked sequence similarity clustering

03 Properties

Name	Overloads	Summary
workerThreads	1	实际用于并行计算的工作线程数量

04 Fields

Name	Overloads	Summary
hash	1	sort by sequence length in desc order

05 Members

method .ctor #

#ctor(Int32, Nullable(Of Int32))

Parameters

Name	Type	Description
`k`	`Int32`	protein - k=5aa nucleotide - k=12nt genomics - k=31nt
`n_threads`	`Nullable(Of Int32)`	用于并行计算的工作线程数量；在没有指定的时候会按照当前机器的CPU核数来自动选取

method FindSimilar #

FindSimilar(Double)

implements of the CD-hit liked sequence similarity clustering

property workerThreads #

workerThreads

实际用于并行计算的工作线程数量

field hash #

hash

sort by sequence length in desc order