nuget
生成序列上面的Feature位点计算的种子
SeedBox
01 Syntax
SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Topologically.Seeding.SeedBox
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| .ctor | 1 | 会将*和-这些缺口的符号是需要被过滤掉的 |
| PopulateSeeds | 1 | |
| PopulateSeedsFromSeedsFile | 1 |
03 Members
#ctor(
IPolymerSequenceModel)会将*和-这些缺口的符号是需要被过滤掉的
Parameters
| Name | Type | Description |
|---|---|---|
seq | IPolymerSequenceModel | - |
PopulateSeeds(
Int32, Int32)Remarks
这个函数会丢弃掉在目标序列上不存在的种子以加快计算效率
Parameters
| Name | Type | Description |
|---|---|---|
min% | Int32 | - |
max% | Int32 | - |
PopulateSeedsFromSeedsFile(
String, IPolymerSequenceModel, Int32, Int32)Parameters
| Name | Type | Description |
|---|---|---|
seeds$ | String | 序列种子文件的文件路径 |
seq | IPolymerSequenceModel | - |
min% | Int32 | - |
max% | Int32 | - |