FeatureParser

Full name SMRUCC.genomics.Annotation.Assembly.NCBI.GenBank.TabularFormat.GFF.FeatureParser Assembly SMRUCC.genomics.Annotation Members 5

01 Syntax

SMRUCC.genomics.Annotation.Assembly.NCBI.GenBank.TabularFormat.GFF.FeatureParser

02 Methods

Name	Overloads	Summary
ToString	1	生成gff文件之中的一行的基因组特性位点的数据
CreateObject	1	Fields are: <seqname> <source> <feature> <start> <end> <score> <strand> <frame> [attributes] [comments]
CreateObjectGff3	1
attributeTokens	1	Row parsing into column tokens

03 Fields

Name	Overloads	Summary
SplitRegxExpression	1	A regex expression string that use for split the line text.

04 Members

method ToString #

ToString(Feature)

生成gff文件之中的一行的基因组特性位点的数据

method CreateObject #

CreateObject(String, Int32)

 Fields are: <seqname> <source> <feature> <start> <end> <score> <strand> <frame> [attributes] [comments]

Parameters

Name	Type	Description
`data`	`String`	-
`version`	`Int32`	gff1, gff2, gff3之间的差异是由于本属性值的列的读取方式的差异而产生的

method CreateObjectGff3 #

CreateObjectGff3(String)

Remarks

gi|66571684|gb|CP000050.1| RefSeq Coding gene 42 1370 . + . name=dnaA;product="chromosome replication initiator DnaA"

Parameters

Name	Type	Description
`data`	`String`	-

method attributeTokens #

attributeTokens(String)

Row parsing into column tokens

Parameters

Name	Type	Description
`Line`	`String`	-

field SplitRegxExpression #

SplitRegxExpression

A regex expression string that use for split the line text.