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API Docs / SMRUCC.genomics.Core / FeatureQualifiers

FeatureQualifiers

Full name SMRUCC.genomics.Assembly.NCBI.GenBank.GBFF.Keywords.FEATURES.FeatureQualifiers Assembly SMRUCC.genomics.Core Members 67

Qualifiers provide additional information about features. They take the form of a slash (/) followed by a qualifier name and, if applicable, an equal sign (=) and a qualifier value. Feature qualifiers begin at column 22

00 Remarks

请注意,由于是直接使用ToString方法进行查询键值的获取的,所以请不要修改这些枚举对象的大小写

01 Syntax

SMRUCC.genomics.Assembly.NCBI.GenBank.GBFF.Keywords.FEATURES.FeatureQualifiers

02 Fields

NameOverloadsSummary
anticodon 2 Location of the anticodon of tRNA and the amino acid for which it codes
bound_moiety 2 Moiety bound
citation 2 Reference to a citation providing the claim of or evidence for a feature
codon 2 Specifies a codon that is different from any found in the reference genetic code
codon_start 2 Indicates the first base of the first complete codon in a CDS (as 1 or 2 or 3)
cons_splice 2 Identifies intron splice sites that do not conform to the 5'-GT...
db_xref 2 A database cross-reference; pointer to related information in another database.
direction 2 Direction of DNA replication
EC_number 2 Enzyme Commission number for the enzyme product of the sequence
evidence 2 Value indicating the nature of supporting evidence
frequency 2 Frequency of the occurrence of a feature
function 2 Function attributed to a sequence
gene 2 Symbol of the gene corresponding to a sequence region (usable with all features)
label 2 A label used to permanently identify a feature
map 2 Map position of the feature in free-format text
mod_base 2 Abbreviation for a modified nucleotide base
note 2 Any comment or additional information
number 2 A number indicating the order of genetic elements (e.g., exons or introns) in the 5 to 3 direction
organism 2 Name of the organism that is the source of the sequence data in the record.
partial 2 Differentiates between complete regions and partial ones
phenotype 2 Phenotype conferred by the feature
product 2 Name of a product encoded by a coding region (CDS) feature
pseudo 2 Indicates that this feature is a non-functional version of the element named by the feature key
rpt_family 2 Type of repeated sequence; Alu or Kpn, for example
rpt_type 2 Organization of repeated sequence
rpt_unit 2 Identity of repeat unit that constitutes a repeat_region
standard_name 2 Accepted standard name for this feature
transl_except 2 Translational exception: single codon, the translation of which does not conform to the reference genetic code
translation 2 Amino acid translation of a coding region
type 2 Name of a strain if different from that in the SOURCE field
usedin 2 Indicates that feature is used in a compound feature in another entry
inference 1
locus_tag 1
mol_type 1
transl_table 1
protein_id 1

03 Members

field anticodon #
anticodon

Location of the anticodon of tRNA and the amino acid for which it codes

field bound_moiety #
bound_moiety

Moiety bound

field citation #
citation

Reference to a citation providing the claim of or evidence for a feature

field codon #
codon

Specifies a codon that is different from any found in the reference genetic code

field codon_start #
codon_start

Indicates the first base of the first complete codon in a CDS (as 1 or 2 or 3)

field cons_splice #
cons_splice

Identifies intron splice sites that do not conform to the 5'-GT... AG-3' splice site consensus

field db_xref #
db_xref

A database cross-reference; pointer to related information in another database. A description of all cross-references can be found at: http://www.ncbi.nlm.nih.gov/collab/db_xref.html

field direction #
direction

Direction of DNA replication

field EC_number #
EC_number

Enzyme Commission number for the enzyme product of the sequence

field evidence #
evidence

Value indicating the nature of supporting evidence

field frequency #
frequency

Frequency of the occurrence of a feature

field function #
function

Function attributed to a sequence

field gene #
gene

Symbol of the gene corresponding to a sequence region (usable with all features)

field label #
label

A label used to permanently identify a feature

field map #
map

Map position of the feature in free-format text

field mod_base #
mod_base

Abbreviation for a modified nucleotide base

field note #
note

Any comment or additional information

field number #
number

A number indicating the order of genetic elements (e.g., exons or introns) in the 5 to 3 direction

field organism #
organism

Name of the organism that is the source of the sequence data in the record.

field partial #
partial

Differentiates between complete regions and partial ones

field phenotype #
phenotype

Phenotype conferred by the feature

field product #
product

Name of a product encoded by a coding region (CDS) feature

field pseudo #
pseudo

Indicates that this feature is a non-functional version of the element named by the feature key

field rpt_family #
rpt_family

Type of repeated sequence; Alu or Kpn, for example

field rpt_type #
rpt_type

Organization of repeated sequence

field rpt_unit #
rpt_unit

Identity of repeat unit that constitutes a repeat_region

field standard_name #
standard_name

Accepted standard name for this feature

field transl_except #
transl_except

Translational exception: single codon, the translation of which does not conform to the reference genetic code

field translation #
translation

Amino acid translation of a coding region

field type #
type

Name of a strain if different from that in the SOURCE field

field usedin #
usedin

Indicates that feature is used in a compound feature in another entry

field anticodon overload 2 #
anticodon
field bound_moiety overload 2 #
bound_moiety
field citation overload 2 #
citation
field codon overload 2 #
codon
field codon_start overload 2 #
codon_start
field cons_splice overload 2 #
cons_splice
field db_xref overload 2 #
db_xref
field direction overload 2 #
direction
field EC_number overload 2 #
EC_number
field evidence overload 2 #
evidence
field frequency overload 2 #
frequency
field function overload 2 #
function
field gene overload 2 #
gene
field inference #
inference
field label overload 2 #
label
field locus_tag #
locus_tag
field map overload 2 #
map
field mod_base overload 2 #
mod_base
field mol_type #
mol_type
field note overload 2 #
note
field number overload 2 #
number
field organism overload 2 #
organism
field partial overload 2 #
partial
field phenotype overload 2 #
phenotype
field product overload 2 #
product
field pseudo overload 2 #
pseudo
field rpt_family overload 2 #
rpt_family
field rpt_type overload 2 #
rpt_type
field rpt_unit overload 2 #
rpt_unit
field standard_name overload 2 #
standard_name
field transl_except overload 2 #
transl_except
field translation overload 2 #
translation
field type overload 2 #
type
field usedin overload 2 #
usedin
field transl_table #
transl_table
field protein_id #
protein_id