nuget
The gene brief information data in a ncbi PTT document.(PTT文件之中的一行，即一个基因的对象摘要信息)
GeneBrief
01 Syntax
SMRUCC.genomics.Assembly.NCBI.GenBank.TabularFormat.ComponentModels.GeneBrief
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| DocumentParser | 2 | |
| ToString | 1 | |
| Clone | 1 | |
| getCOGEntry | 1 | |
| CreateObject | 1 | |
| Strand | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| Location | 1 | The location of this ORF gene on the genome sequence.(包含有PTT文件之中的Location, Strand和Length列) |
| Gene | 1 | 基因名，在genbank文件里面是/gene=，基因号，这个应该是GI编号，而非平常比较熟悉的字符串编号 |
| Product | 1 | Protein product functional description in the genome. |
| Length | 1 | The NT length of this ORF. |
| Synonym | 1 | The gene's locus_tag data. |
| IsORF | 1 | .ptt => TRUE; *.rnt => FALSE |
| IsBlankSegment | 1 | 判断本对象是否是由LocationDescriptions.BlankSegment())方法所生成的空白片段 |
| PID | 1 | |
| Code | 1 | |
| COG | 1 | |
| ATG | 1 | |
| TGA | 1 |
04 Members
DocumentParser(
String, Boolean)Parameters
| Name | Type | Description |
|---|---|---|
strLine | String | Ptt文档之中的一行数据 |
DocumentParser(
String)42..1370 + 442 66766353 dnaA XC_0001 - COG0593L chromosome replication initiator DnaA
Parameters
| Name | Type | Description |
|---|---|---|
strLine | String | - |
Location
The location of this ORF gene on the genome sequence.(包含有PTT文件之中的Location, Strand和Length列)
Gene
基因名，在genbank文件里面是/gene=，基因号，这个应该是GI编号，而非平常比较熟悉的字符串编号
Product
Protein product functional description in the genome. (基因的蛋白质产物的功能的描述)
Length
The NT length of this ORF.
Synonym
The gene's locus_tag data. (我们所正常熟知的基因编号，PTT对象主要是使用这个属性值来生成字典对象的)
IsORF
.ptt => TRUE; .rnt => FALSE
IsBlankSegment
判断本对象是否是由LocationDescriptions.BlankSegment()方法所生成的空白片段
PID
Code
COG
ATG
TGA
ToString()
Clone()
getCOGEntry()
CreateObject(IGeneBrief)
Strand()