LocationDescriptions

Full name SMRUCC.genomics.ContextModel.LocationDescriptions Assembly SMRUCC.genomics.Core Members 10

01 Syntax

SMRUCC.genomics.ContextModel.LocationDescriptions

02 Methods

Name	Overloads	Summary
IsBlankSegment	1	判断本对象是否是由LocationDescriptions.BlankSegment())方法所生成的空白片段
GetLociRelations	1	Get the loci relationship between the target gene and the specific feature loci.
GetLociRelations	1	Get the loci relationship between the target gene and the specific feature loci.
ATGDistance	1	Calculate the ATG distance between the target gene and the specific feature loci.
GetATGDistance	1	Calculates the ATG distance between the target gene and a loci segment on.(计算位点相对于某一个基因的ATG距离)
LocationDescription	1	Gets the loci location description data.
BlankSegment	1
ATGDistance	1
LocationDescription	1

03 Fields

Name	Overloads	Summary
BLANK_VALUE	1

04 Members

method IsBlankSegment #

IsBlankSegment(IGeneBrief)

判断本对象是否是由LocationDescriptions.BlankSegment()方法所生成的空白片段

method GetLociRelations #

GetLociRelations``1(``0, NucleotideLocation)

Get the loci relationship between the target gene and the specific feature loci.

Type Parameters

Name	Description
`T`

Parameters

Name	Type	Description
`gene`	``0	-
`nucl`	NucleotideLocation	-

method GetLociRelations #

GetLociRelations(NucleotideLocation, NucleotideLocation)

Get the loci relationship between the target gene and the specific feature loci.

Parameters

Name	Type	Description
`gene`	NucleotideLocation	-
`nucl`	NucleotideLocation	-

method ATGDistance #

ATGDistance``1(``0, NucleotideLocation)

Calculate the ATG distance between the target gene and the specific feature loci.

Type Parameters

Name	Description
`T`

Parameters

Name	Type	Description
`gene`	``0	-
`nucl`	NucleotideLocation	-

method GetATGDistance #

GetATGDistance(Location, IGeneBrief)

Calculates the ATG distance between the target gene and a loci segment on.(计算位点相对于某一个基因的ATG距离)

Parameters

Name	Type	Description
`loci`	Location	-
`gene`	IGeneBrief	-

Returns

总是计算最大的距离

method LocationDescription #

LocationDescription``1(SegmentRelationships, ``0)

Gets the loci location description data.

Type Parameters

Name	Description
`T`

Parameters

Name	Type	Description
`posi`	SegmentRelationships	-
`data`	``0	-

field BLANK_VALUE #

BLANK_VALUE

method BlankSegment #

BlankSegment(NucleotideLocation)

method ATGDistance #

ATGDistance(T, NucleotideLocation)

method LocationDescription #

LocationDescription(SegmentRelationships, T)