nuget
Context model of a specific genomics feature site.
Context
01 Syntax
SMRUCC.genomics.ContextModel.Context
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| GetRelation | 1 | Get relationship between target NucleotideLocation with current feature site. |
| __relUnstrand | 1 | Get SegmentRelationships ignored of nucleotide Strands. |
| ToString | 1 | Get tags data |
| PopulateSequence | 1 |
03 Fields
| Name | Overloads | Summary |
|---|---|---|
| feature | 2 | Current feature site |
| upstream | 2 | Context.feature its upstream region with a specific length |
| downstream | 2 | Context.feature its downstream region with a specific length |
| antisense | 2 | the complement strand location of current Context.feature |
| tag | 2 | The user custom tag data for this feature site. |
| distance | 1 |
04 Members
GetRelation(NucleotideLocation,
Boolean)Get relationship between target NucleotideLocation with current feature site.
Parameters
| Name | Type | Description |
|---|---|---|
loci | NucleotideLocation | - |
stranded | Boolean | Get SegmentRelationships ignored of nucleotide Strands? |
__relUnstrand(NucleotideLocation)
Get SegmentRelationships ignored of nucleotide Strands.
Parameters
| Name | Type | Description |
|---|---|---|
loci | NucleotideLocation | - |
ToString
Get tags data
feature
Current feature site
upstream
Context.feature its upstream region with a specific length
downstream
Context.feature its downstream region with a specific length
antisense
the complement strand location of current Context.feature
tag
The user custom tag data for this feature site.
feature
upstream
downstream
antisense
distance
tag
PopulateSequence(FastaSeq)