Feature

Full name SMRUCC.genomics.Assembly.NCBI.GenBank.GBFF.Keywords.FEATURES.Feature Assembly SMRUCC.genomics.Core Members 10

A sequence feature site on the genome DNA sequence.

00 Remarks

(基因组序列上面的特性区域片段)

01 Syntax

SMRUCC.genomics.Assembly.NCBI.GenBank.GBFF.Keywords.FEATURES.Feature

02 Methods

Name	Overloads	Summary
ToGeneFasta	1	create fasta sequence model for the gene nucleotide sequence
Query	2	Get feature describ value string by key
QueryDuplicated	1	Some key would be duplicated
Add	1	添加一个注释信息

03 Properties

Name	Overloads	Summary
KeyName	1	第6至第20列的小字段的字段名
Location	1	The location of this feature site on the DNA chain.
SequenceData	1	nt sequence of this feature site.
Item	1	对于已经存在的数据，本方法会覆盖原有的数据，假若不存在，或者目标对象有多个值，则会进行添加

04 Fields

Name	Overloads	Summary
attrSet	1	请注意在值中有拼接断行所产生的空格，在导出CDS序列的时候，请注意消除该空格

05 Members

method ToGeneFasta #

ToGeneFasta(StringTemplate)

create fasta sequence model for the gene nucleotide sequence

Parameters

Name	Type	Description
`title`	`StringTemplate`	-

method Query overload 2 #

Query(String)

Remarks

query by a FeatureQualifiers key string name

Parameters

Name	Type	Description
`key`	`String`	the feature qualifier name

Returns

this function returns nothing if the given key is not found in current feature.

method Query #

Query(FeatureQualifiers)

Get feature describ value string by key

Parameters

Name	Type	Description
`Key`	FeatureQualifiers	-

method QueryDuplicated #

QueryDuplicated(String)

Some key would be duplicated

Parameters

Name	Type	Description
`key`	`String`	-

method Add #

Add(String, String)

添加一个注释信息

Parameters

Name	Type	Description
`key`	`String`	-
`value`	`String`	-

property KeyName #

KeyName

第6至第20列的小字段的字段名

property Location #

Location

The location of this feature site on the DNA chain.

Remarks

(本特性位点在DNA链上面的位置)

property SequenceData #

SequenceData

nt sequence of this feature site.

property Item #

Item(String)

对于已经存在的数据，本方法会覆盖原有的数据，假若不存在，或者目标对象有多个值，则会进行添加

Parameters

Name	Type	Description
`key`	`String`	-

field attrSet #

attrSet

请注意在值中有拼接断行所产生的空格，在导出CDS序列的时候，请注意消除该空格

Remarks

这里不能够使用字典来进行储存数据，因为字典对大小写敏感并且这里面会有重复的Key出现